Endonuclease PvuII (1PVI) DNA - GATTACAGATTACA
CAP - Catabolite gene Activating Protein (1BER)
DNA - GATTACAGATTACAGATTACA Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI) DNA - GATTACAGATTACAGATTACA TBP - TATA box Binding Protein (1C9B)
CAP - Catabolite gene Activating Protein (1BER)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
TBP - TATA box Binding Protein (1C9B)
 

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YASARA or the entire computer freezes

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YASARA hangs, but other programs are not affected

What looks like a freeze, may actually only be a long delay caused by a lengthy calculation. YASARA normally uses progress bars to provide visual feedback, but if you are working with extremely large structures containing 100000s of atoms, even simple things can take a long time. Look here for some hints how to improve performance.

  • If you are using the Twinset, just switching to a WHAT IF menu can already take a long time (30+ seconds), especially if there are 10000s of water molecules present. Try to remove the objects containing water molecules before using WHAT IF functions.

  • If your molecule is not extremely large and you are not using WHAT IF functions, then please contact support@yasara.org, providing the scene that caused the hang.

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The computer freezes when you minimize the YASARA window

This problem was reported for notebooks with ATI Radeon 9600 Mobility running Windows with a Radeon driver around 6.14.10.6422. Please update your graphics driver.

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The computer freezes when you start YASARA a second time

This 'issue' was observed on a Dual-Athlon PC with a Geforce card and Linux. Due to a bug in NVIDIA's driver (verified for V31.23), opening two YASARA windows at the same time can freeze the PC, please download the latest driver from www.nvidia.com .