CAP - Catabolite gene Activating Protein (1BER)

Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

Your guide to YASARA View

°

Essentials

-

What you really have to know

°

Selections

-

Tell YASARA what you want

°

Commands

-

Tell YASARA what to do

°

File

-

Load and save the scene or parts of it

°

Edit

-

Change content and properties of the soup

°

Simulation

-

Simulate the soup

°

Analyze

-

Analyze the soup

°

View

-

Change the appearance of the soup

°

Effects

-

Change and animate the scene

°

Options

-

Other commands

°

Window

-

Change the display properties

°

Location

-

Place the YASARA window

°

Menus

-

Change the appearance of menus

°

Console

-

Configure the console

°

Antialiasing

-

Smooth is better

°

Frequency

-

Change the frames per second and save battery power

°

Stereo

-

Time to touch your molecules

Choose a stereo mode and adjust the stereo parameters to let molecules fly out of the screen.

°
Stereo
-
Set stereo mode

°
StereoPar
-

Set stereo parameters

°

Help

-

Access the documentation and solve problems

°

Index

-

All commands in alphabetic order

°

Recipes

-

Answer complex questions

°

Macros

-

Automate your work with Yanaconda

°

Plugins

-

Extend YASARA with your own functions

°

Scripts

-

Use YASARA as a Python module

°

Troubleshooting

-

Get things going