Your guide to YASARA View
°
Essentials
-
What you really have to know
°
Selections
-
Tell YASARA what you want
°
Selections are defined by a final type and an expression
°
Possible final selection types are All, Obj, Mol, Res and Atom
°
Ranges can be specified with a minus sign
°
A logical OR is assumed between items of the same selection type
°
A logical AND is assumed if you switch the selection type
°
Selections are inflated to the final selection type at the end
°
Additional selection types allow to filter for various properties
°
Names can be negated with an exclamation mark '!'
°
Names can be wildcards using a question mark '?'
°
Names with unusual characters can be quoted
°
Selections can be combined with explicit operators
°
Selections are not case sensitive except for two special cases
°
Selection windows allow to build selections with the mouse
°
Yanaconda helps to define selection subsets
°
Examples of selections needed in real-life
°
Commands
-
Tell YASARA what to do
°
Recipes
-
Answer complex questions
°
Macros
-
Automate your work with Yanaconda
°
Plugins
-
Extend YASARA with your own functions
°
Scripts
-
Use YASARA as a Python module
°
Troubleshooting
-
Get things going