CAP - Catabolite gene Activating Protein (1BER)

DNA - GATTACAGATTACAGATTACA

Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI)

DNA - GATTACAGATTACAGATTACA

TBP - TATA box Binding Protein (1C9B)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

TBP - TATA box Binding Protein (1C9B)

Your guide to YASARA View

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Essentials

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What you really have to know

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Selections

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Tell YASARA what you want

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Commands

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Tell YASARA what to do

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Recipes

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Answer complex questions

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Macros

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Automate your work with Yanaconda

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Plugins

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Extend YASARA with your own functions

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Scripts

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Use YASARA as a Python module

°	Windows users can obtain Python from www.python.org

°	Copy and import yasara/pym/yasara.py

°	There is a Python function wrapper for most YASARA commands

°	Python functions return either nothing, a single value or a list

°	YASARA specific data is available in 'info'

°	YASARA commands with multiple formats map to different Python functions

°	A subset of the YASARA soup can be obtained as a pdb_file instance

°	The console needs to be switched off for maximum performance

°	There is a specific Python function for each experiment

°	The Python module can run YASARA in graphics or text mode

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Troubleshooting

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Get things going