Your guide to YASARA View
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Essentials
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What you really have to know
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Selections
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Tell YASARA what you want
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Commands
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Tell YASARA what to do
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Recipes
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Answer complex questions
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Run molecular dynamics simulations
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Refine a homology model
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Solve an NMR structure
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Setting the parameters
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Folding the structure
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Refining the structure in vacuo
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Refining the structure in explicit solvent
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Analyzing the ensemble
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Handling special cases like Cys-bridges, oligomers and metalloproteins
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Avoiding problems with hydrogen nomenclature
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Making floating assignments
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Create your own YASARA Movies
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Macros
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Automate your work with Yanaconda
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Plugins
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Extend YASARA with your own functions
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Scripts
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Use YASARA as a Python module
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Troubleshooting
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Get things going