Your guide to YASARA View
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Essentials
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What you really have to know
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Getting started
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The ten magic words
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The three potential pitfalls
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The keys and mouse buttons to use
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The command line parameters
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Running YASARA in special environments
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Running YASARA without graphics
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Running YASARA on one machine with multiple users
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Running YASARA from an NFS mounted volume
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Running YASARA on a 64 bit operating system
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Working with extremely large protein structures
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Citing YASARA, its algorithms and force fields
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Reporting bugs, problems and inconveniences
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Screenshots as examples of what you can do
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Selections
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Tell YASARA what you want
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Commands
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Tell YASARA what to do
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Recipes
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Answer complex questions
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Macros
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Automate your work with Yanaconda
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Plugins
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Extend YASARA with your own functions
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Scripts
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Use YASARA as a Python module
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Troubleshooting
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Get things going