Endonuclease PvuII (1PVI) DNA - GATTACAGATTACA
CAP - Catabolite gene Activating Protein (1BER)
DNA - GATTACAGATTACAGATTACA Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI) DNA - GATTACAGATTACAGATTACA TBP - TATA box Binding Protein (1C9B)
CAP - Catabolite gene Activating Protein (1BER)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)
TBP - TATA box Binding Protein (1C9B)
 

Your guide to YASARA View



° 

Essentials

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What you really have to know


° 

Selections

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Tell YASARA what you want


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Commands

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Tell YASARA what to do


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File

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Load and save the scene or parts of it

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Edit

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Change content and properties of the soup

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Simulation

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Simulate the soup

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Analyze

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Analyze the soup

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View

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Change the appearance of the soup

° 

Effects

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Change and animate the scene


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Position

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Place and move objects

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Orientation

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Orient and rotate objects

Orient or rotate objects, continuously, until a certain orientation is reached or to a nice view.

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AutoRotateTo<Obj|All>

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Rotate objects or scene automatically to a certain orientation

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AutoRotate<Obj|All>

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Rotate objects or scene automatically

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NiceOri<Obj|All>

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Orient objects nicely

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Ori<Obj|All>

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Set/get object or scene orientation

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Rotate<Obj|All>

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Rotate objects or scene

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Labels

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Display text labels

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Marks and zooms - Mark atoms with fireflies and zoom in

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Arrows

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Show arrows connecting atoms or points

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Solids

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Show spheres, boxes, pyramids, cylinders, tori and others

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Images

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Show and animate bitmaps

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Text

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Print text, possibly in 3D letters

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Options

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Other commands

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Window

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Change the display properties

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Help

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Access the documentation and solve problems

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Index

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All commands in alphabetic order


° 

Recipes

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Answer complex questions


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Macros

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Automate your work with Yanaconda


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Plugins

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Extend YASARA with your own functions


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Scripts

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Use YASARA as a Python module


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Troubleshooting

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Get things going