Your guide to YASARA View
°
Essentials
-
What you really have to know
°
Selections
-
Tell YASARA what you want
°
Commands
-
Tell YASARA what to do
°
File
-
Load and save the scene or parts of it
°
Edit
-
Change content and properties of the soup
°
Simulation
-
Simulate the soup
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Analyze
-
Analyze the soup
°
View
-
Change the appearance of the soup
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Effects
-
Change and animate the scene
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Options
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Other commands
°
Experiments
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Let YASARA cook for you
°
Macros
-
Watch YASARA do the work for you
Save YASARA's current state in a macro
or
record your input as a macro
(excluding mouse movements),
play back your own macros
or those
made by others with a higher stage of YASARA
,
stopping
whenever you want. You can use the back/forward icons in the top right corner to
jump around in the macro
. Macros can
wait for certain events
before they continue,
raise errors
if something goes wrong,
take a certain action
if an error occurs,
disallow user input
,
speedup animations if the graphics get slow
,
require a minimum YASARA version
, and be
applied to a certain target
. You can save a lot of time by running macros in text console mode (start YASARA with command line parameter -con).
°
Go
-
Go to another position in the macro
°
MacroTarget
-
Set macro target
°
OnError
-
Set error action
°
PlayMacro
-
Play back macro
°
PlayMovie
-
Play back macro as a movie
°
RaiseError
-
Display error message
°
RecordMacro
-
Record all following commands in a macro
°
RequireVersion
-
Require a minimum YASARA version
°
SaveMacro
-
Save a macro to restore the current state
°
SpeedUp
-
Speed up movements when graphics are slow
°
StopMacro
-
Stop macro playback or recording
°
UserInput
-
Set user input
°
Wait
-
Wait for certain time period or condition
°
Tables
-
Collect, visualize and export data
°
Formats
-
Choose the residue output format
°
Logs
-
Redirect output to a file
°
Plugins
-
Run plugins from a macro
°
Default pH - Set the H+ ion concentration and residue pKas
°
Quantum mechanics - Configure YAPAC
°
Coordinate system - Live in a left or right handed world
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Units
-
Choose your favorite units
°
Parallel computations - Configure multi CPU core usage
°
Input devices - Configure the interaction with YASARA
°
Shell
-
Execute shell commands
°
Window
-
Change the display properties
°
Help
-
Access the documentation and solve problems
°
Index
-
All commands in alphabetic order
°
Recipes
-
Answer complex questions
°
Macros
-
Automate your work with Yanaconda
°
Plugins
-
Extend YASARA with your own functions
°
Scripts
-
Use YASARA as a Python module
°
Troubleshooting
-
Get things going