CAP - Catabolite gene Activating Protein (1BER)

DNA - GATTACAGATTACAGATTACA

Endonuclease PvuII bound to palindromic DNA recognition site CAGCTG (1PVI)

DNA - GATTACAGATTACAGATTACA

TBP - TATA box Binding Protein (1C9B)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

GCN4 - leucine zipper transcription factor bound to palindromic DNA recognition site ATGAC(G)TCAT (1YSA)

TBP - TATA box Binding Protein (1C9B)

Your guide to YASARA View

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Essentials

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What you really have to know

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Selections

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Tell YASARA what you want

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Commands

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Tell YASARA what to do

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File

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Load and save the scene or parts of it

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Edit

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Change content and properties of the soup

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Simulation

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Simulate the soup

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Analyze

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Analyze the soup

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View

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Change the appearance of the soup

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Effects

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Change and animate the scene

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Position

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Place and move objects

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Orientation

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Orient and rotate objects

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Labels

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Display text labels

°	Marks and zooms - Mark atoms with fireflies and zoom in

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Arrows

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Show arrows connecting atoms or points

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Solids

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Show spheres, boxes, pyramids, cylinders, tori and others

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Images

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Show and animate bitmaps

Load a bitmap in Windows BMP- or PNG-format, show it on screen , move it around or do more complicated animations and let the image disappear again. You can also swap images, attach them to objects , toggle fogging, hide them and finally delete them.

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AnimateImage
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Animate appearance and disappearance of images

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AutoMoveImage
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Move images automatically

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DelImage
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Delete images

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HideImage
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Hide images

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ImageFog
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Switch image fog on/off

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LoadBMP
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Load image from BMP file

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LoadPNG
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Load image from PNG file

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MakeImageObj
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Make object with attached image

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ShowImage
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Show images

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SwapImage
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Swap images

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UnrestImage
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Let animated image disappear

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Text
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Print text, possibly in 3D letters

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Options

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Other commands

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Window

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Change the display properties

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Help

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Access the documentation and solve problems

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Index

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All commands in alphabetic order

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Recipes

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Answer complex questions

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Macros

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Automate your work with Yanaconda

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Plugins

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Extend YASARA with your own functions

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Scripts

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Use YASARA as a Python module

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Troubleshooting

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Get things going