Your guide to YASARA View
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Essentials
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What you really have to know
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Selections
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Tell YASARA what you want
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Commands
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Tell YASARA what to do
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Recipes
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Answer complex questions
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Run molecular dynamics simulations
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Refine a homology model
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Solve an NMR structure
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Create your own YASARA Movies
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Movies are written in Yanaconda
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Movies are stored in the yasara/mov directory
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Movies start with typical commands
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Movies can wait for a specified time or until you press a button
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Labels allow to jump back and forth between movie sections
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Work with YASARA and your text editor in parallel
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Movies can be imported from OpenOffice or PowerPoint
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Bitmap images can be displayed and animated
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Text can be displayed using 3D letters
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The look of the movie depends on the aspect ratio of the YASARA window
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Hints for using movies in important presentations
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Macros
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Automate your work with Yanaconda
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Plugins
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Extend YASARA with your own functions
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Scripts
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Use YASARA as a Python module
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Troubleshooting
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Get things going