Your guide to YASARA View

°  File - Load and save the scene or parts of it °  Edit - Change content and properties of the soup °  Simulation - Simulate the soup °  Analyze - Analyze the soup °  Atom position - Calculate average positions and RMSFs °  Superposition - Align atoms and calculate RMSDs °  Contacts - List contacts and hydrogen bonds °  Energy - Calculate energies °  Electrostatics - Calculate electrostatic potentials and charges °  Geometry - Measure distances, angles, dihedrals and radii °  Rotamers - Show rotamer distributions °  Secondary structure - Calculate secondary structure content °  Surface areas - Calculate VdW, molecular and accessible surfaces °  Volumes - Calculate VdW, molecular and solvent accessible volumes °  Soup content - List, count and compare units, get boundaries °  Checks - Search for errors °  View - Change the appearance of the soup °  Effects - Change and animate the scene °  Options - Other commands °  Window - Change the display properties °  Help - Access the documentation and solve problems °  Index - All commands in alphabetic order